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https://github.com/VibedByKaKi/t3-code-android-nightly.git
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311 lines
11 KiB
TypeScript
311 lines
11 KiB
TypeScript
import * as AWS from "@/AWS";
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import * as Core from "@/Test/Core";
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import * as Test from "@/Test/Alchemy";
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import * as sts from "@distilled.cloud/aws/sts";
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import { describe, expect } from "alchemy-test";
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import * as Data from "effect/Data";
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import * as Effect from "effect/Effect";
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import * as Schedule from "effect/Schedule";
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import * as HttpClient from "effect/http/HttpClient";
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import * as HttpClientRequest from "effect/http/HttpClientRequest";
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import ComprehendMedicalTestFunctionLive, {
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ComprehendMedicalTestFunction,
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} from "./handler";
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const testOptions = { providers: AWS.providers() };
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const { test, beforeAll, afterAll } = Test.make(testOptions);
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const sharedStack = Core.scratchStack(testOptions, "ComprehendMedicalBindings");
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// Lambda function URL cold-start (DNS, IAM propagation, init) can take well
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// over 60s on a fresh deploy under parallel-suite load. Budget ~150s of
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// readiness polling.
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const readinessPolicy = Schedule.max([
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Schedule.fixed("2 seconds"),
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Schedule.recurs(75),
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]);
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let baseUrl: string;
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class TransientUpstream extends Data.TaggedError("TransientUpstream")<{
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readonly status: number;
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readonly body: string;
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}> {}
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// The shared Lambda fixture occasionally answers a transient 5xx under
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// parallel load (cold re-init, IAM propagation, throttling surfaced as a
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// defect). Retry 5xx only; a genuine 4xx/assertion failure surfaces
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// immediately.
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const send = (request: HttpClientRequest.HttpClientRequest) =>
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HttpClient.execute(request).pipe(
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Effect.flatMap((response) =>
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response.status >= 500
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? response.text.pipe(
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Effect.flatMap((body) =>
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Effect.fail(
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new TransientUpstream({ status: response.status, body }),
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),
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),
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)
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: Effect.succeed(response),
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),
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Effect.retry({
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while: (e) => e._tag === "TransientUpstream",
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schedule: Schedule.max([
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Schedule.exponential("1 second"),
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Schedule.recurs(5),
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]),
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}),
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);
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describe(
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"ComprehendMedical Bindings",
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{
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tags: [
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"provider:aws",
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"provider:aws:comprehendmedical",
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"provider:aws:lambda",
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"live",
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],
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},
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() => {
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beforeAll(
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Effect.gen(function* () {
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yield* Effect.logInfo(
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"ComprehendMedical test setup: destroying previous resources",
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);
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yield* sharedStack.destroy();
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yield* Effect.logInfo(
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"ComprehendMedical test setup: deploying fixture",
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);
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const { functionUrl } = yield* sharedStack.deploy(
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Effect.gen(function* () {
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return yield* ComprehendMedicalTestFunction;
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}).pipe(Effect.provide(ComprehendMedicalTestFunctionLive)),
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);
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expect(functionUrl).toBeTruthy();
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baseUrl = functionUrl!.replace(/\/+$/, "");
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const readinessUrl = `${baseUrl}/ping`;
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yield* Effect.logInfo(
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`ComprehendMedical test setup: probing readiness at ${readinessUrl}`,
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);
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yield* HttpClient.get(readinessUrl).pipe(
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Effect.flatMap((response) =>
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response.status === 200
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? Effect.succeed(response)
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: Effect.fail(
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new Error(`Function not ready: ${response.status}`),
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),
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),
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Effect.tapError((error) =>
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Effect.logWarning(
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`ComprehendMedical test setup: fixture not ready yet (${String(error)})`,
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),
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),
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Effect.retry({ schedule: readinessPolicy }),
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);
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}),
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{ timeout: 240_000 },
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);
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afterAll(sharedStack.destroy(), { timeout: 120_000 });
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describe("DetectEntitiesV2", () => {
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test.provider(
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"extracts medical entities from a clinical note",
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(_stack) =>
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Effect.gen(function* () {
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const response = (yield* send(
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HttpClientRequest.get(`${baseUrl}/entities`),
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).pipe(Effect.flatMap((r) => r.json))) as {
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entities: Array<{ text: string; category: string; type: string }>;
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modelVersion: string;
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};
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expect(response.entities.length).toBeGreaterThan(0);
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// atenolol is a medication; hypertension is a medical condition.
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const categories = response.entities.map((e) => e.category);
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expect(categories).toContain("MEDICATION");
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expect(categories).toContain("MEDICAL_CONDITION");
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expect(response.modelVersion.length).toBeGreaterThan(0);
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}),
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{ timeout: 120_000 },
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);
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});
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describe("DetectPHI", () => {
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test.provider(
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"detects protected health information",
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(_stack) =>
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Effect.gen(function* () {
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const response = (yield* send(
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HttpClientRequest.get(`${baseUrl}/phi`),
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).pipe(Effect.flatMap((r) => r.json))) as {
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entities: Array<{ text: string; type: string }>;
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};
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expect(response.entities.length).toBeGreaterThan(0);
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const types = response.entities.map((e) => e.type);
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// The note contains a name, an age, and a date.
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expect(types).toContain("NAME");
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}),
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{ timeout: 120_000 },
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);
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});
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describe("InferICD10CM", () => {
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test.provider(
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"links conditions to ICD-10-CM codes",
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(_stack) =>
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Effect.gen(function* () {
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const response = (yield* send(
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HttpClientRequest.get(`${baseUrl}/icd10`),
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).pipe(Effect.flatMap((r) => r.json))) as {
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entities: Array<{
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text: string;
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codes: Array<{ code: string; description: string }>;
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}>;
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};
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expect(response.entities.length).toBeGreaterThan(0);
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const withCodes = response.entities.filter(
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(e) => e.codes.length > 0,
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);
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expect(withCodes.length).toBeGreaterThan(0);
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// ICD-10-CM codes look like "E11.9", "I10", etc.
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expect(withCodes[0].codes[0].code.length).toBeGreaterThan(0);
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}),
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{ timeout: 120_000 },
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);
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});
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describe("InferRxNorm", () => {
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test.provider(
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"links medications to RxNorm concepts",
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(_stack) =>
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Effect.gen(function* () {
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const response = (yield* send(
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HttpClientRequest.get(`${baseUrl}/rxnorm`),
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).pipe(Effect.flatMap((r) => r.json))) as {
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entities: Array<{
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text: string;
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concepts: Array<{ code: string; description: string }>;
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}>;
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};
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expect(response.entities.length).toBeGreaterThan(0);
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const withConcepts = response.entities.filter(
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(e) => e.concepts.length > 0,
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);
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expect(withConcepts.length).toBeGreaterThan(0);
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expect(withConcepts[0].concepts[0].code.length).toBeGreaterThan(0);
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}),
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{ timeout: 120_000 },
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);
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});
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describe("InferSNOMEDCT", () => {
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test.provider(
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"links concepts to SNOMED CT codes",
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(_stack) =>
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Effect.gen(function* () {
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const response = (yield* send(
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HttpClientRequest.get(`${baseUrl}/snomed`),
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).pipe(Effect.flatMap((r) => r.json))) as {
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entities: Array<{
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text: string;
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concepts: Array<{ code: string; description: string }>;
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}>;
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};
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expect(response.entities.length).toBeGreaterThan(0);
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const withConcepts = response.entities.filter(
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(e) => e.concepts.length > 0,
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);
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expect(withConcepts.length).toBeGreaterThan(0);
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expect(withConcepts[0].concepts[0].code.length).toBeGreaterThan(0);
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}),
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{ timeout: 120_000 },
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);
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});
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describe("List*Jobs", () => {
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test.provider(
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"lists batch jobs across all five job families",
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(_stack) =>
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Effect.gen(function* () {
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const response = (yield* send(
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HttpClientRequest.get(`${baseUrl}/jobs`),
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).pipe(Effect.flatMap((r) => r.json))) as {
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entities: number;
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icd10cm: number;
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phi: number;
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rxnorm: number;
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snomedct: number;
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};
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// Every list call authorized and answered — counts are >= 0.
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expect(response.entities).toBeGreaterThanOrEqual(0);
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expect(response.icd10cm).toBeGreaterThanOrEqual(0);
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expect(response.phi).toBeGreaterThanOrEqual(0);
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expect(response.rxnorm).toBeGreaterThanOrEqual(0);
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expect(response.snomedct).toBeGreaterThanOrEqual(0);
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}),
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{ timeout: 120_000 },
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);
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});
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describe("Describe*/Stop*Job", () => {
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test.provider(
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"answers with the typed ResourceNotFoundException for unknown jobs",
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(_stack) =>
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Effect.gen(function* () {
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const response = (yield* send(
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HttpClientRequest.get(`${baseUrl}/job-checks`),
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).pipe(Effect.flatMap((r) => r.json))) as {
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describes: string[];
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stops: string[];
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};
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// IAM authorizes before the job lookup, so the typed
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// ResourceNotFoundException proves both wiring and permissions
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// for every describe/stop binding.
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expect(response.describes).toEqual(
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Array(5).fill("ResourceNotFoundException"),
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);
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expect(response.stops).toEqual(
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Array(5).fill("ResourceNotFoundException"),
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);
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}),
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{ timeout: 120_000 },
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);
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});
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describe("StartPHIDetectionJob", () => {
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test.provider(
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"passes IAM authorization and fails typed on the bogus data-access role",
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(_stack) =>
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Effect.gen(function* () {
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// A same-account-but-nonexistent role is rejected AFTER the
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// comprehendmedical:StartPHIDetectionJob authorization with the
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// typed InvalidRequestException (DATA_ACCESS_ROLE_ARN_INVALID); a
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// caller missing the Start permission gets AccessDeniedException
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// instead — so this proves the binding granted the action.
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const { Account } = yield* sts.getCallerIdentity({});
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const roleArn = `arn:aws:iam::${Account}:role/alchemy-nonexistent-comprehendmedical-role`;
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const response = (yield* send(
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HttpClientRequest.get(
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`${baseUrl}/job-start?roleArn=${encodeURIComponent(roleArn)}`,
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),
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).pipe(Effect.flatMap((r) => r.json))) as { tag: string };
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expect(response.tag).toBe("InvalidRequestException");
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}),
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{ timeout: 120_000 },
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);
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});
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},
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);
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